species:   Bodot
pid:       PID1089
parent:    Bd-milR40
paralog:   
locus:     MU009153.1:865558-865704
matures:   ['UUGACGUGAUGAUUAAUGACU', 'UCAUUAUGCACCGUCAGUU']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram MU009153.1:865558-865704

1 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

                                                             *****************************************************                                 
GAUUUCCCACUUGACGUGAUGAUUAAUGACUCAUAGACAGUUACGAGAGUAGCAAUAGAGUAGAUUGUAAUGGAACUAUUGAAAUUCACCUUUUUGUCCAGAUUGCAUGCGUUUGCUUUGUCAUUAUGCACCGUCAGUUGAGCUCUC
.......((.((((((.(.((..(((((((.........(((((....)))))...((((((((((((((((((......(........)......))))..)))))...))))))))))))))))..))))))))).)).......
----------UUGACGUGAUGAUUAAUGACU-------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
------------------------------------------------------------------------------------------------------------------------UCAUUAUGCACCGUCAGUU-------- l=19 a=0 c*
---------------------------------------------------------------AUUGUAAUGGAACUAUUGAAAU-------------------------------------------------------------- l=22 a=1 ma
---------------------------------------------------------------------------------------ACCUUUUUGUCCAGAUUGCAUGCGUUU--------------------------------- l=27 a=0 ma*

---------------------------------------------------------------AUUGUAAUGGAACUAUUGAAAU-------------------------------------------------------------- l=22 a=1 (ma)
---------CUUGACGUGAUGAUUAAUGACU-------------------------------------------------------------------------------------------------------------------- l=22 a=1 

mb-01010
ax-1001011
ku-01
ss-110111101000
fn-011
